Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase | SAMN05421757_10128 | Not Available | Negative | 33712 - 35691 | 71620.4 |
| nad+ diphosphatase | SAMN05421757_10129 | Not Available | Positive | 35914 - 36882 | 34957.0 |
| polyketide cyclase / dehydrase and lipid transport | SAMN05421757_10130 | Not Available | Positive | 36926 - 37378 | 16861.2 |
| prephenate dehydratase | SAMN05421757_10131 | Not Available | Negative | 37392 - 38231 | 30813.6 |
| cytochrome c | SAMN05421757_10132 | Not Available | Positive | 38356 - 38877 | 18050.1 |
| microcin c transport system substrate-binding protein | SAMN05421757_10133 | Not Available | Positive | 39066 - 40934 | 69816.9 |
| microcin c transport system permease protein | SAMN05421757_10134 | Not Available | Positive | 40962 - 42122 | 42096.7 |
| microcin c transport system permease protein | SAMN05421757_10135 | Not Available | Positive | 42124 - 43284 | 43551.1 |
| microcin c transport system atp-binding protein | SAMN05421757_10136 | Not Available | Positive | 43351 - 44988 | 60047.2 |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN05421757_10137 | Not Available | Negative | 45013 - 46368 | 49169.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
