Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate dehydrogenase alpha subunit | SAMN05421757_101642 | Not Available | Positive | 662971 - 665952 | 110283.0 |
| formate dehydrogenase beta subunit | SAMN05421757_101643 | Not Available | Positive | 665964 - 666557 | 21297.3 |
| formate dehydrogenase gamma subunit | SAMN05421757_101644 | Not Available | Positive | 666693 - 667928 | 44817.5 |
| cytochrome c | SAMN05421757_101645 | Not Available | Positive | 667900 - 669207 | 46288.6 |
| hypothetical protein | SAMN05421757_101646 | Not Available | Positive | 669215 - 669340 | 4333.2 |
| two component, sigma54 specific, transcriptional regulator, fis family | SAMN05421757_101647 | Not Available | Positive | 669355 - 670716 | 50554.2 |
| na+-driven multidrug efflux pump | SAMN05421757_101648 | Not Available | Negative | 670726 - 672090 | 48332.1 |
| trap transporter, dctm subunit | SAMN05421757_101649 | Not Available | Negative | 672358 - 673641 | 44603.1 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421757_101650 | Not Available | Negative | 673645 - 674184 | 20110.8 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05421757_101651 | Not Available | Negative | 674250 - 675242 | 35855.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
