Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | SAMN05421757_101612 | Not Available | Positive | 635544 - 635960 | 15279.3 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05421757_101613 | Not Available | Positive | 636018 - 637001 | 36126.2 |
| trap transporter, dctm subunit | SAMN05421757_101614 | Not Available | Positive | 637060 - 638334 | 44832.9 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421757_101615 | Not Available | Positive | 638338 - 638856 | 19571.7 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN05421757_101616 | Not Available | Positive | 638876 - 639601 | 26001.5 |
| hypothetical protein | SAMN05421757_101617 | Not Available | Positive | 639650 - 640000 | 12755.1 |
| fad dependent oxidoreductase | SAMN05421757_101618 | Not Available | Positive | 640106 - 641470 | 48999.8 |
| glycine/d-amino acid oxidase | SAMN05421757_101619 | Not Available | Negative | 641478 - 642779 | 46387.2 |
| spermidine/putrescine transport system permease protein | SAMN05421757_101620 | Not Available | Negative | 642784 - 643644 | 31692.4 |
| spermidine/putrescine transport system permease protein | SAMN05421757_101621 | Not Available | Negative | 643655 - 644521 | 31759.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
