Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-amino-acid dehydrogenase | SAMN05421757_101562 | Not Available | Positive | 575427 - 576656 | 43450.1 |
| arylsulfatase a | SAMN05421757_101563 | Not Available | Negative | 576666 - 578177 | 55297.7 |
| phosphonoacetaldehyde hydrolase | SAMN05421757_101564 | Not Available | Negative | 578229 - 579014 | 28176.9 |
| 2-aminoethylphosphonate-pyruvate transaminase | SAMN05421757_101565 | Not Available | Negative | 579042 - 580223 | 42844.7 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_101566 | Not Available | Negative | 580241 - 581383 | 42501.2 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_101567 | Not Available | Negative | 581380 - 582543 | 41739.8 |
| peptide/nickel transport system permease protein | SAMN05421757_101568 | Not Available | Negative | 582543 - 583694 | 42475.3 |
| peptide/nickel transport system permease protein | SAMN05421757_101569 | Not Available | Negative | 583697 - 584689 | 36195.2 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_101570 | Not Available | Negative | 584779 - 586827 | 75730.8 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_101571 | Not Available | Negative | 586947 - 587813 | 31634.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
