Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter, dctm subunit | SAMN05421757_10118 | Not Available | Negative | 20584 - 21909 | 48466.9 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421757_10119 | Not Available | Negative | 21909 - 22433 | 20267.4 |
| predicted n-formylglutamate amidohydrolase | SAMN05421757_10120 | Not Available | Negative | 22460 - 23281 | 29087.8 |
| transcriptional regulator, rpir family | SAMN05421757_10121 | Not Available | Positive | 23405 - 24256 | 32099.4 |
| octaheme c-type cytochrome, tetrathionate reductase family | SAMN05421757_10122 | Not Available | Positive | 24733 - 26376 | 59457.7 |
| cytochrome b561 | SAMN05421757_10123 | Not Available | Positive | 26378 - 27040 | 25808.7 |
| rnd family efflux transporter, mfp subunit | SAMN05421757_10124 | Not Available | Positive | 27270 - 28250 | 34226.1 |
| multidrug efflux pump subunit acrb | SAMN05421757_10125 | Not Available | Positive | 28243 - 31449 | 114906.0 |
| glucosyl-3-phosphoglycerate synthase | SAMN05421757_10126 | Not Available | Negative | 31515 - 32735 | 45503.4 |
| mannosyl-3-phosphoglycerate phosphatase | SAMN05421757_10127 | Not Available | Negative | 32754 - 33533 | 27116.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
