Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| microcystin degradation protein mlrc, contains duf1485 domain | SAMN05421757_101552 | Not Available | Negative | 563652 - 565199 | 53537.9 |
| aspartyl-trna(asn)/glutamyl-trna(gln) amidotransferase subunit a | SAMN05421757_101553 | Not Available | Negative | 565148 - 565864 | 25429.1 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421757_101554 | Not Available | Negative | 566606 - 567376 | 26982.2 |
| transcriptional regulator, lysr family | SAMN05421757_101555 | Not Available | Positive | 567597 - 568514 | 33263.3 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN05421757_101556 | Not Available | Positive | 568603 - 569598 | 35382.1 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421757_101557 | Not Available | Positive | 569665 - 570144 | 17728.4 |
| trap transporter, dctm subunit | SAMN05421757_101558 | Not Available | Positive | 570141 - 571430 | 44569.9 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN05421757_101559 | Not Available | Positive | 571446 - 572384 | 33809.1 |
| biotin/methionine sulfoxide reductase | SAMN05421757_101560 | Not Available | Positive | 572395 - 574635 | 80039.9 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN05421757_101561 | Not Available | Positive | 574635 - 575414 | 27400.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
