Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione peroxidase | SAMN05421757_101542 | Not Available | Positive | 552226 - 552747 | 19090.8 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_101543 | Not Available | Positive | 552778 - 553440 | 22874.5 |
| uncharacterized membrane protein yebe, duf533 family | SAMN05421757_101544 | Not Available | Negative | 553490 - 554374 | 29001.4 |
| selenocysteine lyase/cysteine desulfurase | SAMN05421757_101545 | Not Available | Positive | 554736 - 555995 | 44743.0 |
| di- and tricarboxylate transporter | SAMN05421757_101546 | Not Available | Negative | 556005 - 557750 | 60723.9 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN05421757_101547 | Not Available | Negative | 557858 - 558637 | 27347.9 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_101548 | Not Available | Negative | 558653 - 560233 | 56648.0 |
| peptide/nickel transport system permease protein | SAMN05421757_101549 | Not Available | Negative | 560230 - 561108 | 30852.6 |
| peptide/nickel transport system permease protein | SAMN05421757_101550 | Not Available | Negative | 561105 - 562025 | 32626.8 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_101551 | Not Available | Negative | 562090 - 563604 | 54974.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
