Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, contains xre-family hth domain | SAMN05421757_101532 | Not Available | Positive | 540214 - 540627 | 15286.2 |
| histidinol-phosphatase, inositol monophosphatase family | SAMN05421757_101533 | Not Available | Positive | 540647 - 541486 | 29253.2 |
| cytosine/adenosine deaminase | SAMN05421757_101534 | Not Available | Positive | 541488 - 542831 | 47210.3 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_101535 | Not Available | Negative | 542836 - 544095 | 45607.8 |
| transcriptional regulator, laci family | SAMN05421757_101536 | Not Available | Negative | 544237 - 545286 | 37607.1 |
| dihydroxy-acid dehydratase | SAMN05421757_101537 | Not Available | Positive | 545507 - 547300 | 64592.4 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421757_101538 | Not Available | Positive | 547486 - 547983 | 18183.6 |
| trap transporter, dctm subunit | SAMN05421757_101539 | Not Available | Positive | 547976 - 549595 | 56264.8 |
| trap-type mannitol/chloroaromatic compound transport system, substrate-binding protein | SAMN05421757_101540 | Not Available | Positive | 549647 - 550708 | 37634.7 |
| predicted unusual protein kinase regulating ubiquinone biosynthesis, aarf/abc1/ubib family | SAMN05421757_101541 | Not Available | Positive | 550834 - 552174 | 49275.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
