Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polyhydroxyalkanoate synthesis repressor phar | SAMN05421757_101481 | Not Available | Positive | 492005 - 492556 | 20425.5 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_101482 | Not Available | Positive | 492633 - 493610 | 36325.2 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | SAMN05421757_101483 | Not Available | Negative | 493620 - 494822 | 43369.1 |
| l-glutamine synthetase | SAMN05421757_101484 | Not Available | Negative | 494932 - 496290 | 50129.5 |
| gmp synthase (glutamine-hydrolysing) | SAMN05421757_101485 | Not Available | Negative | 496294 - 496974 | 24778.0 |
| glutamate--putrescine ligase | SAMN05421757_101486 | Not Available | Negative | 497020 - 498375 | 50264.1 |
| amino acid abc transporter membrane protein 2, paat family | SAMN05421757_101487 | Not Available | Negative | 498406 - 499245 | 31804.2 |
| amino acid abc transporter membrane protein 1, paat family | SAMN05421757_101488 | Not Available | Negative | 499242 - 500042 | 30159.0 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN05421757_101489 | Not Available | Negative | 500210 - 500926 | 25245.6 |
| amino acid abc transporter atp-binding protein, paat family | SAMN05421757_101490 | Not Available | Negative | 500975 - 501754 | 28707.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
