Tropicimonas sediminicola strain DSM 29339

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas sediminicola strain DSM 29339 is a Gram-negative, non-motile, rod-shaped bacterium that exhibits aerobic respiration. This bacterium thrives at an optimal temperature of 37°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. The genomic characteristics of T. sediminicola include a single replicon, as evidenced by its accession number FZOY00000000.1. This genetic simplicity may suggest a streamlined metabolic and reproductive strategy, which is often advantageous for survival in specific ecological niches. Given its aerobic nature and mesophilic growth requirements, T. sediminicola is likely well-adapted to environments with ample oxygen and moderate temperatures, such as sediment habitats. The presence of such bacteria in sediment ecosystems can play a significant role in biogeochemical cycles, particularly in the breakdown of organic matter and the cycling of nutrients. Their metabolic activities could contribute to the overall health and functionality of the sediment environment, supporting diverse microbial communities and influencing sediment composition. In summary, Tropicimonas sediminicola strain DSM 29339 exemplifies a specialized microbial organism adapted to specific environmental conditions, emphasizing the ecological importance of mesophilic, aerobic bacteria in sedimentary ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas sediminicola
Strainstrain DSM 29339

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas sediminicola strain DSM 29339 genome assembly,

Gene Summary

Adenine Count

869409 bp

Thymine Count

870408 bp

Guanine Count

1713070 bp

Cytosine Count

1721333 bp

Genome Length

5174220 bp

Protein-coding Genes

4782 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ahpc/tsa family proteinSAMN05421757_101461Not AvailablePositive470147 - 47070120217.1
phosphoglycolate phosphataseSAMN05421757_101462Not AvailablePositive470698 - 47136624165.9
haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or edSAMN05421757_101463Not AvailablePositive471363 - 47205523837.3
putative lipoproteinSAMN05421757_101464Not AvailableNegative472181 - 47293327100.7
transcriptional regulator, badm/rrf2 familySAMN05421757_101465Not AvailableNegative473064 - 47354317329.0
atp-binding cassette, subfamily c, cyddSAMN05421757_101466Not AvailablePositive473618 - 47531558238.2
atp-binding cassette, subfamily c, cydcSAMN05421757_101467Not AvailablePositive475312 - 47697357394.9
cytochrome bd-i ubiquinol oxidase subunit 1 apoproteinSAMN05421757_101468Not AvailablePositive477087 - 47870060252.6
cytochrome bd-i ubiquinol oxidase subunit 2 apoproteinSAMN05421757_101469Not AvailablePositive478707 - 47987042162.9
cyd operon protein ybgtSAMN05421757_101470Not AvailablePositive479883 - 4799934181.12

Displaying genes 491 – 500 of 4854 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.