Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ahpc/tsa family protein | SAMN05421757_101461 | Not Available | Positive | 470147 - 470701 | 20217.1 |
| phosphoglycolate phosphatase | SAMN05421757_101462 | Not Available | Positive | 470698 - 471366 | 24165.9 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN05421757_101463 | Not Available | Positive | 471363 - 472055 | 23837.3 |
| putative lipoprotein | SAMN05421757_101464 | Not Available | Negative | 472181 - 472933 | 27100.7 |
| transcriptional regulator, badm/rrf2 family | SAMN05421757_101465 | Not Available | Negative | 473064 - 473543 | 17329.0 |
| atp-binding cassette, subfamily c, cydd | SAMN05421757_101466 | Not Available | Positive | 473618 - 475315 | 58238.2 |
| atp-binding cassette, subfamily c, cydc | SAMN05421757_101467 | Not Available | Positive | 475312 - 476973 | 57394.9 |
| cytochrome bd-i ubiquinol oxidase subunit 1 apoprotein | SAMN05421757_101468 | Not Available | Positive | 477087 - 478700 | 60252.6 |
| cytochrome bd-i ubiquinol oxidase subunit 2 apoprotein | SAMN05421757_101469 | Not Available | Positive | 478707 - 479870 | 42162.9 |
| cyd operon protein ybgt | SAMN05421757_101470 | Not Available | Positive | 479883 - 479993 | 4181.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
