Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cholesterol transport system auxiliary component | SAMN05421757_1018 | Not Available | Negative | 7868 - 8503 | 22337.7 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN05421757_1019 | Not Available | Negative | 8512 - 10251 | 61708.6 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN05421757_10110 | Not Available | Negative | 10261 - 11046 | 27769.7 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN05421757_10111 | Not Available | Negative | 11049 - 12188 | 40115.5 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | SAMN05421757_10112 | Not Available | Negative | 12285 - 14729 | 89598.6 |
| transcriptional regulator, xre family with cupin sensor | SAMN05421757_10113 | Not Available | Negative | 14742 - 15299 | 20393.3 |
| 4-hydroxybutyrate dehydrogenase/hypothetical protein | SAMN05421757_10114 | Not Available | Negative | 15441 - 16586 | 40263.1 |
| acyl-coa reductase | SAMN05421757_10115 | Not Available | Negative | 16592 - 17968 | 48955.4 |
| glutamine synthetase | SAMN05421757_10116 | Not Available | Negative | 18030 - 19394 | 50433.8 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN05421757_10117 | Not Available | Negative | 19494 - 20528 | 38419.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
