Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN05421757_1196 | Not Available | Negative | 5082673 - 5083389 | 25865.7 |
| phosphoglycolate phosphatase | SAMN05421757_1197 | Not Available | Negative | 5083811 - 5084041 | 8180.18 |
| ribulose-5-phosphate 3-epimerase | SAMN05421757_1198 | Not Available | Negative | 5084041 - 5084736 | 24454.5 |
| fructose-bisphosphate aldolase | SAMN05421757_1199 | Not Available | Negative | 5084872 - 5085954 | 38967.4 |
| transketolase | SAMN05421757_11910 | Not Available | Negative | 5085957 - 5087954 | 70928.3 |
| phosphoribulokinase | SAMN05421757_11911 | Not Available | Negative | 5087965 - 5088837 | 32721.9 |
| d-fructose 1,6-bisphosphatase | SAMN05421757_11912 | Not Available | Negative | 5088884 - 5089891 | 36386.0 |
| lysr substrate binding domain-containing protein | SAMN05421757_11913 | Not Available | Positive | 5090672 - 5090923 | 8999.98 |
| endonuclease/exonuclease/phosphatase family protein | SAMN05421757_11914 | Not Available | Negative | 5091402 - 5091830 | 15405.5 |
| protein of unknown function | SAMN05421757_11915 | Not Available | Negative | 5094449 - 5096371 | 70061.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
