Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_11819 | Not Available | Positive | 5069901 - 5071064 | 42165.6 |
| sulfotransferase family protein | SAMN05421757_11820 | Not Available | Negative | 5071277 - 5072254 | 37480.9 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_11821 | Not Available | Negative | 5072247 - 5073551 | 47317.0 |
| glycosyl transferase family 2 | SAMN05421757_11822 | Not Available | Positive | 5074185 - 5075198 | 38118.4 |
| oxidase evaa | SAMN05421757_11823 | Not Available | Positive | 5075195 - 5076256 | 39537.7 |
| von willebrand factor type a domain-containing protein | SAMN05421757_1191 | Not Available | Negative | 5076561 - 5078903 | 88010.3 |
| nitric oxide reductase norq protein | SAMN05421757_1192 | Not Available | Negative | 5078911 - 5079720 | 29928.9 |
| ribulose 1,5-bisphosphate carboxylase small subunit | SAMN05421757_1193 | Not Available | Negative | 5079779 - 5080135 | 13477.8 |
| ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | SAMN05421757_1194 | Not Available | Negative | 5080203 - 5081633 | 52904.9 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_1195 | Not Available | Positive | 5081735 - 5082655 | 33514.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
