Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_1189 | Not Available | Negative | 5058616 - 5058873 | 9115.18 |
| hypothetical protein | SAMN05421757_11810 | Not Available | Negative | 5059104 - 5059661 | 19100.6 |
| l,d-transpeptidase catalytic domain | SAMN05421757_11811 | Not Available | Positive | 5060130 - 5061227 | 39022.4 |
| lysm domain-containing protein | SAMN05421757_11812 | Not Available | Positive | 5061451 - 5061885 | 15621.5 |
| hypothetical protein | SAMN05421757_11813 | Not Available | Positive | 5062361 - 5062630 | 9871.95 |
| glucose-1-phosphate cytidylyltransferase | SAMN05421757_11814 | Not Available | Positive | 5062884 - 5063666 | 29429.5 |
| nucleoside-diphosphate-sugar epimerase | SAMN05421757_11815 | Not Available | Positive | 5063668 - 5065962 | 83854.8 |
| methyltransferase domain-containing protein | SAMN05421757_11816 | Not Available | Positive | 5065959 - 5067167 | 44268.9 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN05421757_11817 | Not Available | Positive | 5067193 - 5068692 | 52727.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_11818 | Not Available | Positive | 5068856 - 5069857 | 37869.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
