Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_1178 | Not Available | Negative | 5027333 - 5028418 | 39951.9 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_1179 | Not Available | Negative | 5028426 - 5029490 | 38828.4 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_11710 | Not Available | Negative | 5029631 - 5031367 | 64531.1 |
| transcriptional regulator, deor family | SAMN05421757_11711 | Not Available | Positive | 5031608 - 5032378 | 27535.1 |
| hypothetical protein | SAMN05421757_11712 | Not Available | Negative | 5032484 - 5033383 | 30855.7 |
| dna-binding transcriptional regulator, mocr family, contains an aminotransferase domain | SAMN05421757_11713 | Not Available | Negative | 5033383 - 5034552 | 40742.2 |
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN05421757_11714 | Not Available | Negative | 5034601 - 5035542 | 35542.6 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05421757_11715 | Not Available | Negative | 5035616 - 5036842 | 42896.0 |
| amino acid/amide abc transporter membrane protein 2, haat family | SAMN05421757_11716 | Not Available | Negative | 5036971 - 5037894 | 32486.8 |
| branched-chain amino acid transport system permease protein/neutral amino acid transport system permease protein | SAMN05421757_11717 | Not Available | Negative | 5037898 - 5038752 | 29186.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
