Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_11523 | Not Available | Positive | 4959077 - 4960489 | 53500.9 |
| hypothetical protein | SAMN05421757_11524 | Not Available | Negative | 4960838 - 4961824 | 36355.6 |
| crispr-associated protein, cas2 family | SAMN05421757_11525 | Not Available | Negative | 4962287 - 4962577 | 11180.6 |
| crispr-associated protein, cas1 family | SAMN05421757_11526 | Not Available | Negative | 4962581 - 4963618 | 38412.8 |
| crispr-associated exonuclease, cas4 family | SAMN05421757_11527 | Not Available | Negative | 4963615 - 4964277 | 23922.7 |
| crispr-associated protein, csd2 family | SAMN05421757_11528 | Not Available | Negative | 4964277 - 4965227 | 35077.6 |
| crispr-associated protein, csd1 family | SAMN05421757_11529 | Not Available | Negative | 4965224 - 4966969 | 63893.8 |
| crispr-associated protein, cas5d family | SAMN05421757_11530 | Not Available | Negative | 4966966 - 4967658 | 25788.2 |
| crispr-associated helicase, cas3 family | SAMN05421757_11531 | Not Available | Negative | 4967736 - 4969724 | 73751.4 |
| Trna-phe | Not Available | Not Available | Positive | 4970145 - 4970219 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
