Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper chaperone nosl | SAMN05421757_11513 | Not Available | Negative | 4947268 - 4947798 | 18549.9 |
| cu-processing system permease protein | SAMN05421757_11514 | Not Available | Negative | 4947795 - 4948622 | 28498.6 |
| cu-processing system atp-binding protein | SAMN05421757_11515 | Not Available | Negative | 4948619 - 4949530 | 32002.3 |
| nitrous oxidase accessory protein | SAMN05421757_11516 | Not Available | Negative | 4949527 - 4950783 | 45170.6 |
| nitrous oxide reductase apoprotein | SAMN05421757_11517 | Not Available | Negative | 4950798 - 4952690 | 68963.4 |
| nosr/niri family transcriptional regulator, nitrous oxide reductase regulator | SAMN05421757_11518 | Not Available | Negative | 4952705 - 4954885 | 78629.2 |
| helix-turn-helix | SAMN05421757_11519 | Not Available | Positive | 4955982 - 4956401 | 15586.0 |
| site-specific recombinase xerd | SAMN05421757_11520 | Not Available | Negative | 4956592 - 4957536 | 35306.8 |
| hypothetical protein | SAMN05421757_11521 | Not Available | Positive | 4957719 - 4958456 | 27050.8 |
| hypothetical protein | SAMN05421757_11522 | Not Available | Negative | 4958574 - 4958945 | 13759.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
