Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05421757_11435 | Not Available | Positive | 4914072 - 4914926 | 30250.2 |
| dna-directed rna polymerase subunit beta' | SAMN05421757_11436 | Not Available | Negative | 4915053 - 4919300 | 157411.0 |
| dna-directed rna polymerase subunit beta | SAMN05421757_11437 | Not Available | Negative | 4919374 - 4923510 | 153157.0 |
| lsu ribosomal protein l12p | SAMN05421757_11438 | Not Available | Negative | 4923748 - 4924128 | 13264.0 |
| lsu ribosomal protein l10p | SAMN05421757_11439 | Not Available | Negative | 4924195 - 4924713 | 17870.3 |
| lipoprotein-anchoring transpeptidase erfk/srfk | SAMN05421757_11440 | Not Available | Negative | 4925008 - 4925712 | 25545.4 |
| lytic murein transglycosylase | SAMN05421757_11441 | Not Available | Negative | 4926171 - 4927406 | 43972.0 |
| rhodanese-related sulfurtransferase | SAMN05421757_11442 | Not Available | Positive | 4927561 - 4927935 | 13104.4 |
| quinol monooxygenase ygin | SAMN05421757_11443 | Not Available | Positive | 4928031 - 4928327 | 11154.4 |
| lsu ribosomal protein l1p | SAMN05421757_11444 | Not Available | Negative | 4928386 - 4929087 | 24069.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
