Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine deaminase | SAMN05421757_11425 | Not Available | Negative | 4901843 - 4902241 | 13510.0 |
| malate dehydrogenase (oxaloacetate-decarboxylating)(nadp+) | SAMN05421757_11426 | Not Available | Positive | 4902416 - 4904704 | 82451.3 |
| propionyl-coa synthetase | SAMN05421757_11427 | Not Available | Positive | 4904885 - 4906783 | 69402.0 |
| hpt (histidine-containing phosphotransfer) domain-containing protein | SAMN05421757_11428 | Not Available | Positive | 4907092 - 4908000 | 31494.2 |
| two component, sigma54 specific, transcriptional regulator, fis family | SAMN05421757_11429 | Not Available | Positive | 4907997 - 4909397 | 49927.0 |
| nad+ kinase | SAMN05421757_11430 | Not Available | Negative | 4909394 - 4910191 | 29144.2 |
| serine hydroxymethyltransferase | SAMN05421757_11431 | Not Available | Positive | 4910353 - 4911639 | 45835.7 |
| glutathione s-transferase | SAMN05421757_11432 | Not Available | Positive | 4911710 - 4912423 | 26051.0 |
| eama domain-containing membrane protein rard | SAMN05421757_11433 | Not Available | Negative | 4912429 - 4913337 | 31280.8 |
| transcriptional regulator, tetr family | SAMN05421757_11434 | Not Available | Positive | 4913477 - 4914052 | 21236.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
