Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_11368 | Not Available | Negative | 4870647 - 4871012 | 13670.1 |
| hypothetical protein | SAMN05421757_11369 | Not Available | Negative | 4871202 - 4871408 | 7474.9 |
| aaa domain-containing protein | SAMN05421757_11370 | Not Available | Negative | 4871703 - 4873796 | 77202.6 |
| helix-turn-helix domain-containing protein | SAMN05421757_11371 | Not Available | Negative | 4874004 - 4874228 | 8344.9 |
| phage integrase family protein | SAMN05421757_11372 | Not Available | Negative | 4874828 - 4876096 | 47082.5 |
| site-specific recombinase xerd | SAMN05421757_11373 | Not Available | Positive | 4876407 - 4877588 | 43729.7 |
| l-glyceraldehyde 3-phosphate reductase | SAMN05421757_1141 | Not Available | Positive | 4877949 - 4878980 | 37985.0 |
| putative sos response-associated peptidase yedk | SAMN05421757_1142 | Not Available | Negative | 4878990 - 4879655 | 24552.5 |
| putrescine transport system substrate-binding protein | SAMN05421757_1143 | Not Available | Negative | 4879700 - 4880785 | 39278.0 |
| 5'-nucleotidase | SAMN05421757_1144 | Not Available | Negative | 4880899 - 4882497 | 56582.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
