Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylenetetrahydrofolate--trna-(uracil-5-)- methyltransferase | SAMN05421757_11348 | Not Available | Negative | 4853046 - 4854386 | 48268.9 |
| hypothetical protein | SAMN05421757_11349 | Not Available | Negative | 4854525 - 4855106 | 21433.6 |
| dna gyrase subunit a | SAMN05421757_11350 | Not Available | Negative | 4855381 - 4858140 | 101698.0 |
| usg protein (tryptophan operon, function unknown) | SAMN05421757_11351 | Not Available | Positive | 4858335 - 4858598 | 10602.6 |
| hypothetical protein | SAMN05421757_11352 | Not Available | Negative | 4858612 - 4859910 | 48626.8 |
| disulfide bond formation protein dsbb | SAMN05421757_11353 | Not Available | Negative | 4860019 - 4860480 | 16286.4 |
| membrane protein yqaa, snare-associated domain | SAMN05421757_11354 | Not Available | Negative | 4860477 - 4861055 | 21288.9 |
| hypothetical protein | SAMN05421757_11355 | Not Available | Positive | 4861128 - 4861988 | 30453.6 |
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN05421757_11356 | Not Available | Positive | 4862134 - 4863423 | 47205.2 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05421757_11357 | Not Available | Positive | 4863427 - 4864011 | 21351.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
