Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imp dehydrogenase | SAMN05421757_11338 | Not Available | Positive | 4844948 - 4846402 | 51007.6 |
| streptomycin 6-kinase | SAMN05421757_11339 | Not Available | Positive | 4846679 - 4847398 | 26370.0 |
| collagenase-like protease, prtc family | SAMN05421757_11340 | Not Available | Negative | 4847701 - 4848624 | 33533.2 |
| putative protease | SAMN05421757_11341 | Not Available | Negative | 4848629 - 4849627 | 35968.9 |
| predicted lipid carrier protein yhbt, contains scp2 domain | SAMN05421757_11342 | Not Available | Negative | 4849632 - 4850150 | 19346.6 |
| nifu homolog involved in fe-s cluster formation | SAMN05421757_11343 | Not Available | Negative | 4850385 - 4850831 | 15683.7 |
| phosphoribosyl-amp cyclohydrolase | SAMN05421757_11344 | Not Available | Positive | 4850899 - 4851258 | 13387.1 |
| glutamyl-q trna(asp) synthetase | SAMN05421757_11345 | Not Available | Negative | 4851292 - 4852143 | 31089.2 |
| cyclic nucleotide-binding domain-containing protein | SAMN05421757_11346 | Not Available | Negative | 4852140 - 4852787 | 24111.3 |
| hypothetical protein | SAMN05421757_11347 | Not Available | Negative | 4852861 - 4853049 | 6924.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
