Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-iditol 2-dehydrogenase | SAMN05421757_1138 | Not Available | Positive | 4812609 - 4813772 | 41467.7 |
| carbon-monoxide dehydrogenase medium subunit/xanthine dehydrogenase fad-binding subunit | SAMN05421757_1139 | Not Available | Positive | 4813805 - 4814722 | 32604.0 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | SAMN05421757_11310 | Not Available | Positive | 4814715 - 4816592 | 67367.0 |
| purine hydroxylase beta subunit apoprotein | SAMN05421757_11311 | Not Available | Positive | 4816589 - 4817608 | 35390.9 |
| sugar phosphate isomerase/epimerase | SAMN05421757_11312 | Not Available | Positive | 4817695 - 4818627 | 34587.6 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05421757_11313 | Not Available | Positive | 4818746 - 4819717 | 34013.4 |
| tripartite tricarboxylate transporter tctb family protein | SAMN05421757_11314 | Not Available | Positive | 4819721 - 4820236 | 18313.1 |
| putative tricarboxylic transport membrane protein | SAMN05421757_11315 | Not Available | Positive | 4820293 - 4821825 | 52618.1 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | SAMN05421757_11316 | Not Available | Positive | 4821800 - 4823695 | 66452.8 |
| succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase | SAMN05421757_11317 | Not Available | Positive | 4823707 - 4825155 | 51258.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
