Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine or glycine:cation symporter, agcs family | SAMN05421757_11256 | Not Available | Negative | 4800577 - 4802121 | 54426.9 |
| nucleotide-binding universal stress protein, uspa family | SAMN05421757_11257 | Not Available | Negative | 4802144 - 4802578 | 15587.6 |
| hypothetical protein | SAMN05421757_11258 | Not Available | Positive | 4803256 - 4803471 | 8175.2 |
| hypothetical protein | SAMN05421757_1131 | Not Available | Positive | 4803678 - 4805935 | 77694.9 |
| arac-type dna-binding protein | SAMN05421757_1132 | Not Available | Positive | 4806365 - 4807375 | 35917.8 |
| hypothetical protein | SAMN05421757_1133 | Not Available | Positive | 4807468 - 4809000 | 54389.7 |
| hypothetical protein | SAMN05421757_1134 | Not Available | Positive | 4808997 - 4809728 | 25713.4 |
| carbohydrate-selective porin, oprb family | SAMN05421757_1135 | Not Available | Positive | 4809725 - 4811029 | 47827.7 |
| sensors of blue-light using fad | SAMN05421757_1136 | Not Available | Negative | 4811067 - 4811510 | 16555.5 |
| transcriptional regulator, iclr family | SAMN05421757_1137 | Not Available | Positive | 4811673 - 4812536 | 31352.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
