Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antitoxin phd_yefm, type ii toxin-antitoxin system | SAMN05421757_101410 | Not Available | Negative | 425807 - 426106 | 11163.7 |
| hypothetical protein | SAMN05421757_101411 | Not Available | Negative | 426327 - 426701 | 14058.5 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421757_101412 | Not Available | Positive | 426784 - 427545 | 28091.9 |
| hypothetical protein | SAMN05421757_101413 | Not Available | Positive | 427627 - 427902 | 10364.5 |
| hypothetical protein | SAMN05421757_101414 | Not Available | Negative | 427947 - 428129 | 6134.12 |
| hypothetical protein | SAMN05421757_101415 | Not Available | Positive | 428341 - 428601 | 9273.08 |
| zn-dependent alcohol dehydrogenase | SAMN05421757_101416 | Not Available | Negative | 428638 - 429726 | 37280.9 |
| mfs transporter, dha1 family, tetracycline resistance protein | SAMN05421757_101417 | Not Available | Negative | 429758 - 431008 | 44232.2 |
| 3-oxoadipate enol-lactonase | SAMN05421757_101418 | Not Available | Negative | 431062 - 431847 | 28219.9 |
| l-threonine ammonia-lyase | SAMN05421757_101419 | Not Available | Negative | 431870 - 432841 | 33671.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
