Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type sugar transport system, atpase component | SAMN05421757_11216 | Not Available | Positive | 4741639 - 4744089 | 88257.8 |
| meso-butanediol dehydrogenase / (s,s)-butanediol dehydrogenase / diacetyl reductase | SAMN05421757_11217 | Not Available | Positive | 4744146 - 4744934 | 28234.0 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_11218 | Not Available | Positive | 4745001 - 4745789 | 27561.1 |
| hypothetical protein | SAMN05421757_11219 | Not Available | Negative | 4746423 - 4747139 | 24670.8 |
| fad dependent oxidoreductase | SAMN05421757_11220 | Not Available | Positive | 4747680 - 4748879 | 43029.8 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_11221 | Not Available | Negative | 4749841 - 4751472 | 60018.1 |
| peptide/nickel transport system permease protein | SAMN05421757_11222 | Not Available | Negative | 4751477 - 4752400 | 33255.8 |
| peptide/nickel transport system permease protein | SAMN05421757_11223 | Not Available | Negative | 4752410 - 4753363 | 34567.2 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_11224 | Not Available | Negative | 4753466 - 4755031 | 57050.9 |
| choline-sulfatase | SAMN05421757_11225 | Not Available | Positive | 4755521 - 4757041 | 56982.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
