Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diacylglycerol kinase family enzyme | SAMN05421757_111176 | Not Available | Positive | 4718392 - 4719450 | 38143.8 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN05421757_111177 | Not Available | Positive | 4719450 - 4720238 | 29311.2 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421757_111178 | Not Available | Negative | 4720263 - 4720937 | 24738.3 |
| hypothetical protein | SAMN05421757_111179 | Not Available | Positive | 4721083 - 4721439 | 12763.6 |
| protein of unknown function | SAMN05421757_111180 | Not Available | Negative | 4721470 - 4723263 | 65612.7 |
| hypothetical protein | SAMN05421757_1121 | Not Available | Positive | 4724413 - 4724655 | 8658.47 |
| uncharacterized protein, rmlc-like cupin domain | SAMN05421757_1122 | Not Available | Negative | 4724900 - 4725370 | 17171.2 |
| methyltransferase domain-containing protein | SAMN05421757_1123 | Not Available | Negative | 4725664 - 4726431 | 28382.1 |
| iron complex transport system substrate-binding protein | SAMN05421757_1124 | Not Available | Positive | 4726556 - 4727686 | 41096.4 |
| iron complex transport system permease protein | SAMN05421757_1125 | Not Available | Positive | 4727732 - 4728793 | 36878.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
