Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| regulatory protein, luxr family | SAMN05421757_111156 | Not Available | Negative | 4697740 - 4698453 | 26617.6 |
| crotonyl-coa carboxylase/reductase | SAMN05421757_111157 | Not Available | Negative | 4699044 - 4700327 | 47287.3 |
| (r)-ethylmalonyl-coa mutase | SAMN05421757_111158 | Not Available | Positive | 4700622 - 4702589 | 72197.4 |
| dna-binding protein h-ns | SAMN05421757_111159 | Not Available | Positive | 4702685 - 4703020 | 11993.2 |
| purine-nucleoside phosphorylase | SAMN05421757_111160 | Not Available | Positive | 4703087 - 4703791 | 25220.2 |
| thymidine kinase | SAMN05421757_111161 | Not Available | Positive | 4703852 - 4704466 | 22310.9 |
| transcriptional regulator, gntr family | SAMN05421757_111162 | Not Available | Negative | 4704435 - 4705007 | 21112.9 |
| hypothetical protein | SAMN05421757_111163 | Not Available | Negative | 4705135 - 4705827 | 25789.9 |
| tigr02300 family protein | SAMN05421757_111164 | Not Available | Positive | 4705932 - 4706264 | 12093.3 |
| Trna-ala | Not Available | Not Available | Positive | 4706334 - 4706409 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
