Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-erythro-3-methylmalyl-coa dehydratase | SAMN05421757_111136 | Not Available | Positive | 4680674 - 4681705 | 37142.1 |
| succinate dehydrogenase subunit c | SAMN05421757_111137 | Not Available | Positive | 4682356 - 4682751 | 14624.3 |
| succinate dehydrogenase subunit d | SAMN05421757_111138 | Not Available | Positive | 4682765 - 4683154 | 14477.0 |
| succinate dehydrogenase subunit a | SAMN05421757_111139 | Not Available | Positive | 4683176 - 4684981 | 65264.2 |
| hypothetical protein | SAMN05421757_111140 | Not Available | Positive | 4684981 - 4685397 | 14963.2 |
| succinate dehydrogenase subunit b | SAMN05421757_111141 | Not Available | Positive | 4685481 - 4686260 | 29514.6 |
| short c-terminal domain-containing protein | SAMN05421757_111142 | Not Available | Negative | 4686335 - 4687111 | 26526.4 |
| hypothetical protein | SAMN05421757_111143 | Not Available | Positive | 4687263 - 4688105 | 30643.9 |
| pp_04368 | SAMN05421757_111144 | Not Available | Negative | 4688112 - 4688450 | Not Available |
| pyrroline-5-carboxylate reductase | SAMN05421757_111145 | Not Available | Negative | 4688447 - 4689259 | 27780.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
