Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyl-coa synthetase (adp-forming) alpha subunit | SAMN05421757_111126 | Not Available | Negative | 4671629 - 4672510 | 30116.4 |
| hypothetical protein | SAMN05421757_111127 | Not Available | Negative | 4672523 - 4673533 | 38124.5 |
| hypothetical protein | SAMN05421757_111128 | Not Available | Negative | 4673530 - 4674645 | 41626.6 |
| succinyl-coa synthetase (adp-forming) beta subunit | SAMN05421757_111129 | Not Available | Negative | 4674709 - 4675911 | 42783.7 |
| glycosyl transferase family 2 | SAMN05421757_111130 | Not Available | Positive | 4676257 - 4677288 | 38451.4 |
| malate dehydrogenase (nad) | SAMN05421757_111131 | Not Available | Negative | 4677509 - 4678471 | 33535.6 |
| hypothetical protein | SAMN05421757_111132 | Not Available | Negative | 4678675 - 4678845 | 6755.36 |
| (3s)-malyl-coa thioesterase | SAMN05421757_111133 | Not Available | Positive | 4679029 - 4679898 | 30674.9 |
| nnru protein | SAMN05421757_111134 | Not Available | Positive | 4679909 - 4680463 | 19816.2 |
| hypothetical protein | SAMN05421757_111135 | Not Available | Positive | 4680468 - 4680671 | 7372.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
