Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding beta-propeller fold protein ynce | SAMN05421757_111116 | Not Available | Negative | 4654762 - 4656936 | 76224.2 |
| protein of unknown function | SAMN05421757_111117 | Not Available | Negative | 4657045 - 4657353 | 11328.6 |
| caax protease self-immunity | SAMN05421757_111118 | Not Available | Negative | 4657464 - 4658204 | 27943.3 |
| carbamoyl-phosphate synthase large subunit | SAMN05421757_111119 | Not Available | Positive | 4658336 - 4661692 | 121036.0 |
| sulfotransferase family protein | SAMN05421757_111120 | Not Available | Positive | 4661886 - 4662626 | 27376.0 |
| beta-ketodecanoyl-[acyl-carrier-protein] synthase | SAMN05421757_111121 | Not Available | Positive | 4662748 - 4663875 | 40648.9 |
| dihydrolipoamide dehydrogenase | SAMN05421757_111122 | Not Available | Negative | 4664318 - 4665712 | 48898.4 |
| sulfotransferase family protein | SAMN05421757_111123 | Not Available | Negative | 4665800 - 4666657 | 32131.9 |
| 2-oxoglutarate dehydrogenase e2 component | SAMN05421757_111124 | Not Available | Negative | 4666845 - 4668359 | 52302.9 |
| 2-oxoglutarate dehydrogenase e1 component | SAMN05421757_111125 | Not Available | Negative | 4668364 - 4671315 | 110502.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
