Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_111106 | Not Available | Positive | 4643340 - 4644578 | 45469.4 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05421757_111107 | Not Available | Positive | 4644679 - 4645602 | 34879.9 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05421757_111108 | Not Available | Positive | 4645604 - 4646449 | 31196.8 |
| alpha-galactosidase | SAMN05421757_111109 | Not Available | Positive | 4646446 - 4648530 | 77051.2 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_111110 | Not Available | Positive | 4648618 - 4649388 | 26838.0 |
| 2-keto-3-deoxygalactonate kinase | SAMN05421757_111111 | Not Available | Positive | 4649385 - 4650293 | 31321.3 |
| 2-keto-3-deoxy-phosphogalactonate aldolase | SAMN05421757_111112 | Not Available | Positive | 4650290 - 4650895 | 20485.7 |
| sugar lactone lactonase yvre | SAMN05421757_111113 | Not Available | Positive | 4650892 - 4651752 | 31723.0 |
| beta-galactosidase | SAMN05421757_111114 | Not Available | Positive | 4651749 - 4653653 | 70798.7 |
| aldose 1-epimerase | SAMN05421757_111115 | Not Available | Positive | 4653650 - 4654648 | 34891.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
