Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transaldolase | SAMN05421757_11194 | Not Available | Positive | 4632313 - 4632966 | 23135.1 |
| hypothetical protein | SAMN05421757_11195 | Not Available | Positive | 4633194 - 4633955 | 27943.6 |
| integrase/recombinase xerc | SAMN05421757_11196 | Not Available | Positive | 4633943 - 4634872 | 33313.5 |
| phosphatidylcholine synthase | SAMN05421757_11197 | Not Available | Positive | 4634975 - 4635679 | 25915.3 |
| glycine dehydrogenase (decarboxylating) alpha subunit /glycine dehydrogenase (decarboxylating) beta subunit | SAMN05421757_11198 | Not Available | Negative | 4635743 - 4638580 | 101702.0 |
| glycine cleavage system h protein | SAMN05421757_11199 | Not Available | Negative | 4638744 - 4639103 | 12954.9 |
| aminomethyltransferase | SAMN05421757_111100 | Not Available | Negative | 4639118 - 4640239 | 39951.9 |
| hypothetical protein | SAMN05421757_111103 | Not Available | Positive | 4640547 - 4641125 | 21254.0 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_111104 | Not Available | Negative | 4641325 - 4642383 | 38716.9 |
| transcriptional regulator, iclr family | SAMN05421757_111105 | Not Available | Negative | 4642380 - 4643186 | 29290.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
