Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine/d-amino acid oxidase | SAMN05421757_11164 | Not Available | Positive | 4600726 - 4601811 | 37859.6 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN05421757_11165 | Not Available | Positive | 4601983 - 4602327 | 12125.7 |
| dimethylglycine dehydrogenase | SAMN05421757_11166 | Not Available | Negative | 4602481 - 4604967 | 92294.4 |
| pantothenate synthetase | SAMN05421757_11167 | Not Available | Positive | 4605198 - 4606043 | 30719.0 |
| ketopantoate hydroxymethyltransferase | SAMN05421757_11168 | Not Available | Positive | 4606040 - 4606849 | 28896.0 |
| putative phosphoesterase | SAMN05421757_11169 | Not Available | Positive | 4606993 - 4607655 | 23790.6 |
| uncharacterized domain 1-containing protein | SAMN05421757_11170 | Not Available | Positive | 4607821 - 4608243 | 14785.2 |
| methenyltetrahydrofolate cyclohydrolase /5,10-methylenetetrahydrofolate dehydrogenase (nadp+) | SAMN05421757_11171 | Not Available | Negative | 4608328 - 4609221 | 30956.8 |
| formate-tetrahydrofolate ligase | SAMN05421757_11172 | Not Available | Negative | 4609494 - 4611170 | 59450.6 |
| membrane protease ftsh catalytic subunit | SAMN05421757_11173 | Not Available | Negative | 4611370 - 4613295 | 69679.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
