Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h dehydrogenase (quinone) | SAMN05421757_11144 | Not Available | Negative | 4576886 - 4577650 | 27934.2 |
| heme-degrading monooxygenase hmoa | SAMN05421757_11145 | Not Available | Negative | 4577661 - 4577981 | 12165.2 |
| hypothetical protein | SAMN05421757_11146 | Not Available | Negative | 4578060 - 4578905 | 31096.7 |
| nucleotide-binding universal stress protein, uspa family | SAMN05421757_11147 | Not Available | Negative | 4578969 - 4579376 | 14671.5 |
| hypothetical protein | SAMN05421757_11148 | Not Available | Positive | 4579625 - 4580119 | 17455.0 |
| hypothetical protein | SAMN05421757_11149 | Not Available | Negative | 4580130 - 4580693 | 19690.7 |
| methionine-gamma-lyase | SAMN05421757_11150 | Not Available | Positive | 4580931 - 4582139 | 42557.9 |
| dna polymerase iii, alpha subunit | SAMN05421757_11151 | Not Available | Negative | 4582213 - 4585671 | 127508.0 |
| hypothetical protein | SAMN05421757_11152 | Not Available | Positive | 4585803 - 4586570 | 25761.2 |
| xanthine dehydrogenase small subunit | SAMN05421757_11153 | Not Available | Positive | 4586786 - 4588231 | 51045.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
