Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetoin utilization protein acuc | SAMN05421757_11114 | Not Available | Negative | 4547585 - 4548817 | 44862.8 |
| hypothetical protein | SAMN05421757_11115 | Not Available | Positive | 4548923 - 4549393 | 16902.0 |
| threonine/homoserine efflux transporter rhta | SAMN05421757_11116 | Not Available | Negative | 4549409 - 4550314 | 32200.7 |
| l-lysine exporter family protein lyse/argo | SAMN05421757_11117 | Not Available | Negative | 4550380 - 4550979 | 20809.8 |
| lysr family transcriptional regulator, chromosome initiation inhibitor | SAMN05421757_11118 | Not Available | Positive | 4551069 - 4551974 | 31985.4 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05421757_11119 | Not Available | Positive | 4552050 - 4552889 | 29849.5 |
| nucleoside-diphosphate-sugar epimerase | SAMN05421757_11120 | Not Available | Negative | 4552950 - 4553837 | 30892.9 |
| alpha-n-acetylglucosamine transferase | SAMN05421757_11121 | Not Available | Negative | 4553834 - 4554676 | 31385.5 |
| udp-sulfoquinovose synthase | SAMN05421757_11122 | Not Available | Negative | 4554683 - 4555903 | 45997.8 |
| hypothetical protein | SAMN05421757_11123 | Not Available | Positive | 4556184 - 4556690 | 17505.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
