Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat-containing protein | SAMN05421757_1114 | Not Available | Negative | 4539592 - 4540116 | 19317.9 |
| membrane associated serine protease, rhomboid family | SAMN05421757_1115 | Not Available | Positive | 4540263 - 4540994 | 26701.1 |
| hypothetical protein | SAMN05421757_1116 | Not Available | Negative | 4541007 - 4541216 | 7565.89 |
| myo-inositol-1(or 4)-monophosphatase | SAMN05421757_1117 | Not Available | Negative | 4541250 - 4542047 | 28748.2 |
| lysr family transcriptional regulator, regulator for mete and meth | SAMN05421757_1118 | Not Available | Negative | 4542248 - 4543198 | 35903.5 |
| 5,10-methylenetetrahydrofolate reductase (nad(p)) | SAMN05421757_1119 | Not Available | Positive | 4543250 - 4544116 | 31561.2 |
| hypothetical protein | SAMN05421757_11110 | Not Available | Positive | 4544268 - 4544573 | 10994.3 |
| uncharacterized protein, pa2063/duf2235 family | SAMN05421757_11111 | Not Available | Negative | 4544582 - 4545643 | 39580.4 |
| ornithine decarboxylase | SAMN05421757_11112 | Not Available | Negative | 4545804 - 4546946 | 40631.5 |
| transcriptional regulator, asnc family | SAMN05421757_11113 | Not Available | Positive | 4547149 - 4547580 | 15647.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
