Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system permease protein | SAMN05421757_110155 | Not Available | Positive | 4519332 - 4520306 | 36313.6 |
| peptide/nickel transport system permease protein | SAMN05421757_110156 | Not Available | Positive | 4520306 - 4521211 | 32414.5 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_110157 | Not Available | Positive | 4521211 - 4522914 | 61112.8 |
| transcriptional regulator, tetr family | SAMN05421757_110158 | Not Available | Positive | 4523004 - 4523621 | 22021.3 |
| phosphatidylglycerophosphate synthase | SAMN05421757_110159 | Not Available | Positive | 4524133 - 4524807 | 23945.4 |
| putative thiamine transport system substrate-binding protein | SAMN05421757_110160 | Not Available | Positive | 4524821 - 4526008 | 42945.4 |
| putative thiamine transport system permease protein | SAMN05421757_110161 | Not Available | Positive | 4526005 - 4527720 | 60272.4 |
| putative thiamine transport system atp-binding protein | SAMN05421757_110162 | Not Available | Positive | 4527717 - 4528379 | 23342.3 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_110163 | Not Available | Positive | 4528458 - 4529363 | 32830.8 |
| nitt/taut family transport system substrate-binding protein | SAMN05421757_110164 | Not Available | Positive | 4529501 - 4530514 | 35879.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
