Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein yfca | SAMN05421757_110145 | Not Available | Positive | 4505522 - 4506349 | 28185.5 |
| transcriptional regulator, gntr family | SAMN05421757_110146 | Not Available | Negative | 4506390 - 4507070 | 25554.8 |
| sulfate permease, mfs superfamily | SAMN05421757_110147 | Not Available | Negative | 4507154 - 4509289 | 74036.6 |
| protein of unknown function | SAMN05421757_110148 | Not Available | Negative | 4509303 - 4509680 | 13741.0 |
| l-glutaminase | SAMN05421757_110149 | Not Available | Positive | 4509888 - 4511885 | 72142.3 |
| protein of unknown function | SAMN05421757_110150 | Not Available | Positive | 4512027 - 4512776 | 26558.3 |
| hamp domain-containing protein | SAMN05421757_110151 | Not Available | Positive | 4512773 - 4515451 | 96605.8 |
| response regulator receiver domain-containing protein | SAMN05421757_110152 | Not Available | Positive | 4515448 - 4515813 | 12821.7 |
| response regulator receiver domain-containing protein | SAMN05421757_110153 | Not Available | Positive | 4515818 - 4517338 | 56107.4 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_110154 | Not Available | Positive | 4517666 - 4519312 | 59869.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
