Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-idonate 5-dehydrogenase | SAMN05421757_110135 | Not Available | Negative | 4495237 - 4496280 | 36308.0 |
| gluconate 5-dehydrogenase | SAMN05421757_110136 | Not Available | Negative | 4496282 - 4497049 | 26940.5 |
| l-alanine-dl-glutamate epimerase | SAMN05421757_110137 | Not Available | Negative | 4497059 - 4498255 | 44446.1 |
| transcriptional regulator, gntr family | SAMN05421757_110138 | Not Available | Positive | 4498491 - 4499159 | 24763.8 |
| transcriptional regulator, arac family with amidase-like domain | SAMN05421757_110139 | Not Available | Negative | 4499228 - 4500217 | 35326.2 |
| rhodanese-related sulfurtransferase | SAMN05421757_110140 | Not Available | Positive | 4500312 - 4500749 | 15242.0 |
| trap-type mannitol/chloroaromatic compound transport system, substrate-binding protein | SAMN05421757_110141 | Not Available | Positive | 4500981 - 4502060 | 38866.3 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421757_110142 | Not Available | Positive | 4502066 - 4502590 | 18709.2 |
| trap transporter, dctm subunit | SAMN05421757_110143 | Not Available | Positive | 4502602 - 4503927 | 46188.0 |
| gamma-glutamyltranspeptidase / glutathione hydrolase | SAMN05421757_110144 | Not Available | Positive | 4503931 - 4505517 | 55665.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
