Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_110115 | Not Available | Negative | 4468703 - 4468963 | 8953.5 |
| transglutaminase-like superfamily protein | SAMN05421757_110116 | Not Available | Negative | 4468979 - 4472473 | 132047.0 |
| l-fucose mutarotase | SAMN05421757_110117 | Not Available | Negative | 4472725 - 4473144 | 15250.5 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN05421757_110118 | Not Available | Negative | 4473192 - 4473956 | 26925.1 |
| enoyl-[acyl-carrier-protein] reductase | SAMN05421757_110119 | Not Available | Positive | 4474433 - 4475197 | 27343.8 |
| protein of unknown function | SAMN05421757_110120 | Not Available | Positive | 4475250 - 4477550 | 84575.4 |
| transcriptional regulator, tetr family | SAMN05421757_110121 | Not Available | Negative | 4477567 - 4478175 | 22528.5 |
| membrane fusion protein, multidrug efflux system | SAMN05421757_110122 | Not Available | Positive | 4478394 - 4479545 | 40499.2 |
| hydrophobic/amphiphilic exporter-1, hae1 family/multidrug efflux pump | SAMN05421757_110123 | Not Available | Positive | 4479568 - 4482729 | 112519.0 |
| atp-dependent rna helicase dead | SAMN05421757_110124 | Not Available | Negative | 4482912 - 4484894 | 71440.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
