Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose abc transporter membrane protein /fructose abc transporter membrane protein /ribose abc transporter membrane protein | SAMN05421757_110105 | Not Available | Positive | 4454803 - 4455885 | 38351.6 |
| mannose abc transporter atp-binding protein /fructose abc transporter atp-binding protein /ribose abc transporter atp-binding protein | SAMN05421757_110106 | Not Available | Positive | 4455885 - 4456667 | 28707.0 |
| gamma-glutamyltranspeptidase / glutathione hydrolase | SAMN05421757_110107 | Not Available | Negative | 4456910 - 4458499 | 55566.3 |
| protein of unknown function | SAMN05421757_110108 | Not Available | Positive | 4458782 - 4460431 | 58086.7 |
| protein of unknown function | SAMN05421757_110109 | Not Available | Positive | 4460433 - 4461347 | 32914.2 |
| sodium/proton antiporter, cpa1 family | SAMN05421757_110110 | Not Available | Positive | 4461499 - 4462692 | 42271.6 |
| uncharacterized membrane protein yccc | SAMN05421757_110111 | Not Available | Positive | 4462968 - 4464773 | 65066.4 |
| na+-driven multidrug efflux pump | SAMN05421757_110112 | Not Available | Positive | 4464894 - 4466258 | 48888.6 |
| altronate hydrolase | SAMN05421757_110113 | Not Available | Positive | 4466472 - 4468001 | 53490.9 |
| transcriptional regulator, gntr family | SAMN05421757_110114 | Not Available | Negative | 4468015 - 4468722 | 25824.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
