Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transport system permease protein | SAMN05421757_101380 | Not Available | Positive | 400411 - 401214 | 28866.5 |
| acetylornithine aminotransferase apoenzyme | SAMN05421757_101381 | Not Available | Positive | 401445 - 402626 | 41198.7 |
| ornithine carbamoyltransferase | SAMN05421757_101382 | Not Available | Positive | 402736 - 403662 | 33997.6 |
| atp-dependent helicase hrpb | SAMN05421757_101383 | Not Available | Negative | 403774 - 406218 | 87543.9 |
| protein of unknown function | SAMN05421757_101384 | Not Available | Negative | 406227 - 406955 | 26423.3 |
| lao/ao transport system kinase | SAMN05421757_101385 | Not Available | Positive | 407354 - 408337 | 35141.3 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN05421757_101386 | Not Available | Positive | 408339 - 409214 | 30384.2 |
| lsu ribosomal protein l28p | SAMN05421757_101387 | Not Available | Positive | 409383 - 409670 | 10207.4 |
| hypothetical protein | SAMN05421757_101388 | Not Available | Positive | 409768 - 410106 | 11381.8 |
| hypothetical protein | SAMN05421757_101389 | Not Available | Positive | 410178 - 410645 | 16256.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
