Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05421757_11065 | Not Available | Negative | 4415189 - 4416073 | 33290.9 |
| alpha-galactosidase | SAMN05421757_11066 | Not Available | Negative | 4416073 - 4417509 | 51635.8 |
| transcriptional regulator, arac family | SAMN05421757_11067 | Not Available | Positive | 4417620 - 4418477 | 32282.1 |
| hypothetical protein | SAMN05421757_11068 | Not Available | Positive | 4418585 - 4418926 | 12889.0 |
| hypothetical protein | SAMN05421757_11069 | Not Available | Negative | 4418973 - 4420013 | 36061.3 |
| citrate/tricarballylate utilization protein | SAMN05421757_11070 | Not Available | Negative | 4420072 - 4421169 | 39427.0 |
| tricarballylate dehydrogenase | SAMN05421757_11071 | Not Available | Negative | 4421159 - 4422544 | 49520.8 |
| transcriptional regulator, lysr family | SAMN05421757_11072 | Not Available | Positive | 4422623 - 4423525 | 32178.8 |
| d-3-phosphoglycerate dehydrogenase | SAMN05421757_11073 | Not Available | Negative | 4423531 - 4424514 | 35713.6 |
| universal stress protein family protein | SAMN05421757_11074 | Not Available | Negative | 4424589 - 4425410 | 29812.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
