Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_11055 | Not Available | Negative | 4402686 - 4404035 | 48880.9 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_11056 | Not Available | Negative | 4404161 - 4405114 | 34503.6 |
| arac-type dna-binding protein | SAMN05421757_11057 | Not Available | Positive | 4405372 - 4406370 | 37721.5 |
| short-chain dehydrogenase | SAMN05421757_11058 | Not Available | Positive | 4406566 - 4407387 | 29324.0 |
| pectin methylesterase | SAMN05421757_11059 | Not Available | Negative | 4407829 - 4409199 | 49889.8 |
| unsaturated rhamnogalacturonyl hydrolase | SAMN05421757_11060 | Not Available | Negative | 4409196 - 4410293 | 40462.3 |
| glycosyl hydrolases family 28 | SAMN05421757_11061 | Not Available | Negative | 4410287 - 4411798 | 54263.3 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_11062 | Not Available | Negative | 4411866 - 4413128 | 45708.8 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05421757_11063 | Not Available | Negative | 4413146 - 4414276 | 40799.4 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05421757_11064 | Not Available | Negative | 4414276 - 4415184 | 33916.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
