Tropicimonas sediminicola strain DSM 29339

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas sediminicola strain DSM 29339 is a Gram-negative, non-motile, rod-shaped bacterium that exhibits aerobic respiration. This bacterium thrives at an optimal temperature of 37°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. The genomic characteristics of T. sediminicola include a single replicon, as evidenced by its accession number FZOY00000000.1. This genetic simplicity may suggest a streamlined metabolic and reproductive strategy, which is often advantageous for survival in specific ecological niches. Given its aerobic nature and mesophilic growth requirements, T. sediminicola is likely well-adapted to environments with ample oxygen and moderate temperatures, such as sediment habitats. The presence of such bacteria in sediment ecosystems can play a significant role in biogeochemical cycles, particularly in the breakdown of organic matter and the cycling of nutrients. Their metabolic activities could contribute to the overall health and functionality of the sediment environment, supporting diverse microbial communities and influencing sediment composition. In summary, Tropicimonas sediminicola strain DSM 29339 exemplifies a specialized microbial organism adapted to specific environmental conditions, emphasizing the ecological importance of mesophilic, aerobic bacteria in sedimentary ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas sediminicola
Strainstrain DSM 29339

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas sediminicola strain DSM 29339 genome assembly,

Gene Summary

Adenine Count

869409 bp

Thymine Count

870408 bp

Guanine Count

1713070 bp

Cytosine Count

1721333 bp

Genome Length

5174220 bp

Protein-coding Genes

4782 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbohydrate abc transporter substrate-binding protein, cut1 familySAMN05421757_11055Not AvailableNegative4402686 - 440403548880.9
dna-binding transcriptional regulator, lysr familySAMN05421757_11056Not AvailableNegative4404161 - 440511434503.6
arac-type dna-binding proteinSAMN05421757_11057Not AvailablePositive4405372 - 440637037721.5
short-chain dehydrogenaseSAMN05421757_11058Not AvailablePositive4406566 - 440738729324.0
pectin methylesteraseSAMN05421757_11059Not AvailableNegative4407829 - 440919949889.8
unsaturated rhamnogalacturonyl hydrolaseSAMN05421757_11060Not AvailableNegative4409196 - 441029340462.3
glycosyl hydrolases family 28SAMN05421757_11061Not AvailableNegative4410287 - 441179854263.3
carbohydrate abc transporter substrate-binding protein, cut1 familySAMN05421757_11062Not AvailableNegative4411866 - 441312845708.8
carbohydrate abc transporter atp-binding protein, cut1 familySAMN05421757_11063Not AvailableNegative4413146 - 441427640799.4
carbohydrate abc transporter membrane protein 2, cut1 familySAMN05421757_11064Not AvailableNegative4414276 - 441518433916.1

Displaying genes 4161 – 4170 of 4854 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.