Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_1105 | Not Available | Positive | 4348876 - 4349277 | 14351.2 |
| membrane dipeptidase | SAMN05421757_1106 | Not Available | Positive | 4349305 - 4350477 | 42085.8 |
| doxx-like family protein | SAMN05421757_1107 | Not Available | Positive | 4350599 - 4350964 | 12913.3 |
| porin | SAMN05421757_1108 | Not Available | Positive | 4351006 - 4352259 | 44884.4 |
| phosphoglycerate dehydrogenase | SAMN05421757_1109 | Not Available | Negative | 4352678 - 4353709 | 37376.2 |
| transcriptional regulator, laci family | SAMN05421757_11010 | Not Available | Positive | 4353806 - 4354879 | 38875.4 |
| d-allose transport system substrate-binding protein | SAMN05421757_11011 | Not Available | Positive | 4354913 - 4355887 | 33359.0 |
| monosaccharide abc transporter membrane protein, cut2 family | SAMN05421757_11012 | Not Available | Positive | 4355983 - 4356990 | 34482.2 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN05421757_11013 | Not Available | Positive | 4356987 - 4357757 | 27295.2 |
| d-psicose/d-tagatose/l-ribulose 3-epimerase | SAMN05421757_11014 | Not Available | Positive | 4357760 - 4358614 | 30359.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
