Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN05421757_109189 | Not Available | Positive | 4338060 - 4339103 | 36529.9 |
| 5-formyltetrahydrofolate cyclo-ligase | SAMN05421757_109190 | Not Available | Negative | 4339028 - 4339738 | 25336.5 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN05421757_109191 | Not Available | Negative | 4339813 - 4340922 | 39754.8 |
| putative spermidine/putrescine transport system permease protein | SAMN05421757_109192 | Not Available | Negative | 4340919 - 4341698 | 27647.7 |
| putative spermidine/putrescine transport system permease protein | SAMN05421757_109193 | Not Available | Negative | 4341695 - 4342546 | 30254.5 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05421757_109194 | Not Available | Negative | 4342581 - 4342805 | 8338.61 |
| arac-type dna-binding protein | SAMN05421757_1101 | Not Available | Negative | 4343197 - 4344246 | 38627.3 |
| imidazolonepropionase | SAMN05421757_1102 | Not Available | Positive | 4344432 - 4345949 | 54803.8 |
| imidazolonepropionase | SAMN05421757_1103 | Not Available | Positive | 4346002 - 4347387 | 50800.6 |
| imidazolonepropionase | SAMN05421757_1104 | Not Available | Positive | 4347462 - 4348802 | 48490.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
