Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protoporphyrinogen oxidase | SAMN05421757_109169 | Not Available | Negative | 4309655 - 4310989 | 49724.4 |
| hypothetical protein | SAMN05421757_109170 | Not Available | Negative | 4310982 - 4311989 | 35501.7 |
| dolichol-phosphate mannosyltransferase | SAMN05421757_109171 | Not Available | Negative | 4311982 - 4313016 | 38030.2 |
| hypothetical protein | SAMN05421757_109172 | Not Available | Negative | 4313552 - 4313791 | 8833.42 |
| two component transcriptional regulator, luxr family | SAMN05421757_109173 | Not Available | Negative | 4314123 - 4314893 | 28386.3 |
| mannose-1-phosphate guanylyltransferase | SAMN05421757_109174 | Not Available | Positive | 4315782 - 4316504 | 27156.9 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | SAMN05421757_109175 | Not Available | Positive | 4316553 - 4317689 | 41423.2 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN05421757_109176 | Not Available | Positive | 4317702 - 4318421 | 26823.1 |
| udp-glucose 4-epimerase | SAMN05421757_109177 | Not Available | Positive | 4318418 - 4319452 | 37105.1 |
| polysaccharide export outer membrane protein | SAMN05421757_109178 | Not Available | Positive | 4319442 - 4320761 | 46952.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
