Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose abc transporter atp-binding protein | SAMN05421757_109159 | Not Available | Negative | 4300958 - 4302463 | 54241.6 |
| d-ribose pyranase | SAMN05421757_109160 | Not Available | Negative | 4302484 - 4302903 | 14647.8 |
| osmoprotectant transport system substrate-binding protein | SAMN05421757_109161 | Not Available | Positive | 4303161 - 4304069 | 31033.6 |
| osmoprotectant transport system permease protein | SAMN05421757_109162 | Not Available | Positive | 4304081 - 4305250 | 39454.4 |
| osmoprotectant transport system atp-binding protein | SAMN05421757_109163 | Not Available | Positive | 4305247 - 4306182 | 33972.2 |
| osmoprotectant transport system permease protein | SAMN05421757_109164 | Not Available | Positive | 4306179 - 4306925 | 25658.6 |
| transcriptional regulator, arac family | SAMN05421757_109165 | Not Available | Negative | 4306942 - 4307703 | 27828.6 |
| peroxiredoxin | SAMN05421757_109166 | Not Available | Positive | 4307800 - 4308336 | 19699.6 |
| hypothetical protein | SAMN05421757_109167 | Not Available | Positive | 4308540 - 4309028 | 17167.5 |
| ferric reductase like transmembrane component | SAMN05421757_109168 | Not Available | Positive | 4309066 - 4309644 | 20491.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
