Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amphi-trp domain-containing protein | SAMN05421757_109129 | Not Available | Positive | 4268274 - 4268540 | 9770.56 |
| nadph:quinone reductase | SAMN05421757_109130 | Not Available | Negative | 4268630 - 4269610 | 33850.9 |
| fad-nad(p)-binding | SAMN05421757_109131 | Not Available | Positive | 4269881 - 4271479 | 56686.3 |
| predicted amidohydrolase | SAMN05421757_109132 | Not Available | Negative | 4271525 - 4272502 | 36593.6 |
| n-carbamoyl-l-amino-acid hydrolase | SAMN05421757_109133 | Not Available | Negative | 4272499 - 4273749 | 43454.9 |
| diaminopropionate ammonia-lyase | SAMN05421757_109134 | Not Available | Negative | 4273746 - 4274996 | 43200.7 |
| spermidine/putrescine transport system permease protein | SAMN05421757_109135 | Not Available | Negative | 4275010 - 4275783 | 27852.1 |
| spermidine/putrescine transport system permease protein | SAMN05421757_109136 | Not Available | Negative | 4275783 - 4276646 | 30482.1 |
| spermidine/putrescine transport system atp-binding protein | SAMN05421757_109137 | Not Available | Negative | 4276643 - 4277749 | 39898.0 |
| spermidine/putrescine transport system substrate-binding protein | SAMN05421757_109138 | Not Available | Negative | 4277751 - 4278818 | 39548.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
